RNA-Seq of wild type - SRA

SRX27058161: RNA-Seq of wild type
1 ILLUMINA (Illumina HiSeq X) run: 14.4M spots, 4.3G bases, 1.1Gb downloads

Design: Sequencing libraries were generated by using the NEBNext UltraDirectional RNA Library Prep Kit for Illumina (NEB, USA). Finally, the products were purified (AMPure XP system), and library quality was assessed on the AgilentBioanalyzer 2100 system. The index-coded samples were clustered on a cBot Cluster Generation Systemusing TruSeq PE Cluster Kit v3-cBotHS (Illumina). After cluster generation, the library preparations were sequenced on an Illumina HiSeq platform, and paired-end reads were generated.

Submitted by: Hainan University

Study: RNA-Seq Data of mbpR

PRJNA1197435 • SRP551094 • All experiments • All runs

show Abstracthide Abstract

To gain insight into the regulatory role of mbpR in Lactiplantibacillus plantarum WCFS1, we generated the mbpR deletion mutant, and complemented the mutant with wild-typ MbpR or MbpR(R192A) which lost its ability to bind c-di-GMP. The transcriptomes of those strain were also analyzed and compared.

Sample:

SAMN45804649 • SRS23519637 • All experiments • All runs

Organism: Lactiplantibacillus plantarum

Library:

Name: WT-2

Instrument: Illumina HiSeq X

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Runs: 1 run, 14.4M spots, 4.3G bases, 1.1Gb

Run	# of Spots	# of Bases	Size	Published
SRR31696434	14,403,953	4.3G	1.1Gb	2024-12-12

ID:: 36533724

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